Open source we have built
Everything here is open source and free to use, whether or not you ever work with us. Most of it came out of a project that needed it, and we released it so the next group would not have to build the same thing again.
Showing all projects
Web apps
tachisto - jsPsych experiment builder (opens in a new tab)
Assemble a jsPsych experiment in the browser, then export readable jsPsych source and a self-contained HTML file you can host anywhere.
R-packages · Analyses
Lifebrain Global Brain Health Survey (opens in a new tab)
We conducted the data processing and analyses for all associated reports and publications, and released the data publicly.
R-packages
ggsegverse - Brain atlases in R (opens in a new tab)
Brain atlas data plotted in R — ggseg for 2D with ggplot2, ggseg3d for 3D with Three.js, and atlas packages covering a range of parcellations.
R-packages
tsdrtools - R packages inside TSD (opens in a new tab)
Install R packages inside TSD, UiO’s closed secure server, where install.packages() has no internet to reach.
R-packages
Nettskjemar (opens in a new tab)
Enables download of data and meta-data for surveys conducted with the Nettskjema survey tool by the University of Oslo.
Analyses · MRI
TSD Imaging processing pipeline
Custom MRI import and processing pipeline for the Center of Lifespan Changes in Brain and Cognition.
R-packages
ebrains.kg - EBRAINS Knowledge Graph in R (opens in a new tab)
Query the EBRAINS Knowledge Graph from R, so European neuroscience metadata can be pulled into an analysis instead of browsed by hand.
R-packages
nva - Nasjonalt Vitenarkiv in R (opens in a new tab)
Read Norway’s national research archive from R, for publication lists and reporting without manual exports.
R-packages · MRI
neuromat - Model matrices for neuroimaging (opens in a new tab)
Create the model matrices neuroimaging analyses need from a formula, rather than assembling the columns by hand.
Teaching
Project management in R - workshop (opens in a new tab)
Materials for a one-day workshop on managing a project in R: folder structure, version control, and making the analysis rerun.
Web apps
Data inspector for Nettskjema (opens in a new tab)
Make small corrections to incoming Nettskjema data without touching the originals, so a stray value can be fixed and the raw response still kept.
R-packages
uiothemes - UiO branding in R (opens in a new tab)
University of Oslo branding for R plots, documents and reports, so figures come out looking like UiO without anyone copying hex codes between projects.